GgaEX0010827 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17667101-17688263:-
Coord C1 exon
chr10:17688030-17688263
Coord A exon
chr10:17671844-17671900
Coord C2 exon
chr10:17667101-17667307
Length
57 bp
Sequences
Splice sites
3' ss Seq
TATATATCATTTTTATGCAGGTG
3' ss Score
8.08
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CGGCTCTTATGATGGAAGAATTAAACCCCTATACTAAAATTAGTCCTGCTCTTGGATCAGAGAGGCACTCAGTGGGAGCAATCATTGGAATTATTATTCTCCTTCTAATTATTATGGTCTTGCTGGCACTGTTTGTGTGGTATCGACGGAAACAGAAGGAGAAGGGCCATGACATGCCAAGTGTATCTTACACTCCAGCCATGAGGATGACTAATACAGATTACTCACTTTCTG
Seq A exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
Seq C2 exon
ATTATATGAAGGAATCTGTGTGCAGCTCCAGCACTTGTTCTCTGAACAGCAGTGAAAACCCATACGCCACCATTAAAGATCCCCCCATCTTAACATGCAAACACTCCGAGAGCAGCTACGTGGAAATGAAATCGCCTGGTCACAGGGACTCCCCATATTCAGAAATGCCCACTTCATCAACAGCCAACAAAAACATCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_MULTIEX1-11/13=8-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(18.9=8.9),PF0200911=Rifin_STEVOR=PD(93.4=72.2),PF153301=SIT=PU(70.3=65.8)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000012349fB9354
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGACATGCCAAGTGTA
R:
GGTGGCGTATGGGTTTTCACT
Band lengths:
141-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]