BtaEX6051110 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12721325-12731678:-
Coord C1 exon
chr10:12731574-12731678
Coord A exon
chr10:12729037-12729093
Coord C2 exon
chr10:12721325-12721548
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTATTTTTATGCAGGTG
3' ss Score
10.77
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TAGACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAAGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCTACACTCGCCAG
Seq A exon
GTGCTTGTGGAACGGACAGACGTCAGAACACATACGTTATGGACAAAGGCTTCAAAG
Seq C2 exon
ATTACATGAAAGAATCCGTGTGCAGTTCTAGCACTTGTTCCTTGAATAGCAGTGAAAACCCTTATGCCACAATTAAGGACCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGCTATGAAGAAATGAAGTCGCCTGTGCACAGGGGGTCTCCGTACACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTGGTAGGTGTCTCAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-'20-25,'20-23,22-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.250 C2=0.230
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTAGACACCTCAGCCGC
R:
GTGAGGATGGGTGGGTCCTTA
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]