DreEX6065236 @ danRer10
Exon Skipping
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19166257-19168488:-
Coord C1 exon
chr18:19168434-19168488
Coord A exon
chr18:19167448-19167497
Coord C2 exon
chr18:19166257-19166299
Length
50 bp
Sequences
Splice sites
3' ss Seq
TAAGGTGTCCATTTTTTTAAGCA
3' ss Score
-2.42
5' ss Seq
CCTGTGTTG
5' ss Score
-13.57
Exon sequences
Seq C1 exon
AAAGGCGACAGGAACAGCTCAGAATGGAGAGCATACTGCAATCTCAATGACCTGG
Seq A exon
GCATAGTAAAGTCTGTAAGTTTGCTGAATTTAAATTACAGTATAATACCT
Seq C2 exon
TTTGAACACTATTTTATTAGGTGGCAATTTGTTTTAAGATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686-'26-24,'26-23,27-24=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACAGGAACAGCTCAGAAT
R:
ACATCTTAAAACAAATTGCCACCT
Band lengths:
93-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]