GgaEX0010827 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20328355-20349517:-
Coord C1 exon
chr10:20349284-20349517
Coord A exon
chr10:20333098-20333154
Coord C2 exon
chr10:20328355-20328561
Length
57 bp
Sequences
Splice sites
3' ss Seq
TATATATCATTTTTATGCAGGTG
3' ss Score
8.08
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CGGCTCTTATGATGGAAGAATTAAACCCCTATACTAAAATTAGTCCTGCTCTTGGATCAGAGAGGCACTCAGTGGGAGCAATCATTGGAATTATTATTCTCCTTCTAATTATTATGGTCTTGCTGGCACTGTTTGTGTGGTATCGACGGAAACAGAAGGAGAAGGGCCATGACATGCCAAGTGTATCTTACACTCCAGCCATGAGGATGACTAATACAGATTACTCACTTTCTG
Seq A exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
Seq C2 exon
ATTATATGAAGGAATCTGTGTGCAGCTCCAGCACTTGTTCTCTGAACAGCAGTGAAAACCCATACGCCACCATTAAAGATCCCCCCATCTTAACATGCAAACACTCCGAGAGCAGCTACGTGGAAATGAAATCGCCTGGTCACAGGGACTCCCCATATTCAGAAATGCCCACTTCATCAACAGCCAACAAAAACATCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(18.9=8.9),PF0200911=Rifin_STEVOR=PD(93.4=72.2),PF153301=SIT=PU(77.6=65.8)
A:
PF153301=SIT=PD(20.9=70.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGACATGCCAAGTGTA
R:
GGTGGCGTATGGGTTTTCACT
Band lengths:
141-198
Functional annotations
There are 0 annotated functions for this event