HsaEX6075439 @ hg38
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:65898728-65906670:-
Coord C1 exon
chr15:65906625-65906670
Coord A exon
chr15:65906085-65906141
Coord C2 exon
chr15:65898728-65898934
Length
57 bp
Sequences
Splice sites
3' ss Seq
TACATGTTATTTTTACACAGGTG
3' ss Score
7.97
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATAAGCCTTGGATCCAGGAGAGGACAGACAGGACCAGAGCTGAGAG
Seq A exon
GTGCTTGTGGAATGGATAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
Seq C2 exon
ATTACATGAAAGAATCCGTGTGCAGTTCTAGTACTTGTTCCTTGAATAGCAGTGAAAACCCTTACGCCACAATTAAGGACCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGCTATGTAGAAATGAAGTCGCCTGTGCACATGGGGTCTCCGTACACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'51-64,'51-59,52-64=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.142 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTTGGATCCAGGAGAGG
R:
GTGAGGATGGGTGGGTCCTTA
Band lengths:
138-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains