RnoEX6036174 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70175965-70183969:+
Coord C1 exon
chr8:70175965-70176066
Coord A exon
chr8:70178246-70178302
Coord C2 exon
chr8:70183763-70183969
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTGTTTTTATGCAGGCA
3' ss Score
10.17
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAG
Seq A exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
Seq C2 exon
ATTACATGAAAGAATCTGTGTGCAGTTCTAGTACTTGCTCCTTGAACAGCAGTGAAAACCCTTATGCCACAATTAAGGATCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGTTATGTAGAAATGAAGTCACCTGTGCACATGGGGTCTCCGTACACAGATGTGCCATCCTTGTCAACATCTAATAAAAATATATATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634-'32-44,'32-39,35-44=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=0.297 C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTAGACACCTCAGCCGC
R:
GAAGCTTGCAGGTGAGGATGG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]