MmuEX6066633 @ mm10
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64697807-64705933:+
Coord C1 exon
chr9:64697807-64697908
Coord A exon
chr9:64700097-64700153
Coord C2 exon
chr9:64705727-64705933
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTGTTTTTATGCAGGCA
3' ss Score
10.17
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAG
Seq A exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
Seq C2 exon
ATTACATGAAAGAATCTGTGTGCAGTTCTAGCACTTGCTCCTTGAACAGCAGTGAAAACCCTTACGCCACAATTAAGGACCCACCCATCCTCACCTGCAAGCTTCCAGAAAGCAGTTATGTAGAAATGAAGTCACCTGTGCACTTGGGGTCTCCGTACACAGATGTGCCATCCTTGTCGACATCTAATAAAAATATATATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-'33-44,'33-39,40-44=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.280 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTAGACACCTCAGCCGC
R:
GTGAGGATGGGTGGGTCCTTA
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types