GgaEX0010828 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20328355-20333154:-
Coord C1 exon
chr10:20333098-20333154
Coord A exon
chr10:20329425-20329607
Coord C2 exon
chr10:20328355-20328561
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTCTCCCATACTAGACA
3' ss Score
7.78
5' ss Seq
ATGGCACGT
5' ss Score
2.14
Exon sequences
Seq C1 exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
Seq A exon
ACAGCGGGGGCAACTGGGATTGCAGCTATTTTGCAAGTCCCGCTATTTCACCGGGAGTATTTCATATATACCAGGATCTGCCTTTGTACTGTAACCCAGCACAAGAAAATGCCTCATCTTTCATTGCATCGCTCTAATTCTAAATTAATGGCACTGCCCAGCAGGATGCACACAGCAGCAATG
Seq C2 exon
ATTATATGAAGGAATCTGTGTGCAGCTCCAGCACTTGTTCTCTGAACAGCAGTGAAAACCCATACGCCACCATTAAAGATCCCCCCATCTTAACATGCAAACACTCCGAGAGCAGCTACGTGGAAATGAAATCGCCTGGTCACAGGGACTCCCCATATTCAGAAATGCCCACTTCATCAACAGCCAACAAAAACATCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'16-19,'16-18,17-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
PF153301=SIT=PD(20.9=70.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTGTGGGATGGATAGACG
R:
GGCTGTTGATGAAGTGGGCAT
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]