GgaEX0010828 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17667101-17671900:-
Coord C1 exon
chr10:17671844-17671900
Coord A exon
chr10:17668171-17668353
Coord C2 exon
chr10:17667101-17667307
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTCTCCCATACTAGACA
3' ss Score
7.78
5' ss Seq
ATGGCACGT
5' ss Score
2.14
Exon sequences
Seq C1 exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
Seq A exon
ACAGCGGGGGCAACTGGGATTGCAGCTATTTTGCAAGTCCCGCTATTTCACCGGGAGTATTTCATATATACCAGGATCTGCCTTTGTACTGTAACCCAGCACAAGAAAATGCCTCATCTTTCATTGCATCGCTCTAATTCTAAATTAATGGCACTGCCCAGCAGGATGCACACAGCAGCAATG
Seq C2 exon
ATTATATGAAGGAATCTGTGTGCAGCTCCAGCACTTGTTCTCTGAACAGCAGTGAAAACCCATACGCCACCATTAAAGATCCCCCCATCTTAACATGCAAACACTCCGAGAGCAGCTACGTGGAAATGAAATCGCCTGGTCACAGGGACTCCCCATATTCAGAAATGCCCACTTCATCAACAGCCAACAAAAACATCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_MULTIEX1-12/13=11-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.443
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000012349fB1211
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTGTGGGATGGATAGACG
R:
GGCTGTTGATGAAGTGGGCAT
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]