GgaEX0010826 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20333098-20349791:-
Coord C1 exon
chr10:20349663-20349791
Coord A exon
chr10:20349284-20349517
Coord C2 exon
chr10:20333098-20333154
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTATGAATTACTTTTAACAGCGG
3' ss Score
5.31
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AGTGCTCACCAGGAACATTTGGTTATGGTTGCAAACAACTCTGTGAGTGCATGAATAATGCCACATGTGACCATGTCACAGGTACTTGCTACTGCAGTCCGGGCTTCAAAGGAATCAGATGTGATCAAG
Seq A exon
CGGCTCTTATGATGGAAGAATTAAACCCCTATACTAAAATTAGTCCTGCTCTTGGATCAGAGAGGCACTCAGTGGGAGCAATCATTGGAATTATTATTCTCCTTCTAATTATTATGGTCTTGCTGGCACTGTTTGTGTGGTATCGACGGAAACAGAAGGAGAAGGGCCATGACATGCCAAGTGTATCTTACACTCCAGCCATGAGGATGACTAATACAGATTACTCACTTTCTG
Seq C2 exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'13-17,'13-14,14-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.6=27.3),PF0005319=Laminin_EGF=PU(78.4=65.9),PF0200911=Rifin_STEVOR=PU(4.9=6.8)
A:
PF0005319=Laminin_EGF=PD(18.9=8.9),PF0200911=Rifin_STEVOR=PD(93.4=72.2),PF153301=SIT=PU(77.6=65.8)
C2:
PF153301=SIT=PD(20.9=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTCACCAGGAACATTTGG
R:
TCCATTATGTATGTGTTCTGACGTCT
Band lengths:
172-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]