DreEX6065234 @ danRer10
Exon Skipping
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19158656-19178912:-
Coord C1 exon
chr18:19178784-19178912
Coord A exon
chr18:19174009-19174242
Coord C2 exon
chr18:19158656-19158865
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATTCATGTCCTCTGTTCCAGCGG
3' ss Score
8.62
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AGTGTCCTCCCGGGACATTTGGCTATGGCTGTCAGCAGCTGTGTGAATGTATGAACAACGCCACCTGCGACTATGTGACTGGAACCTGCTACTGCAGCCCGGGATACAAAGGCATCCGCTGTGACCAGG
Seq A exon
CGGCTCTAGTGATGGAGGAACTCAACCCGTACACTAAGATCAGCCCCGCTCTGGGTTCAGAACGCCAGTCCGCAGGCGCCGTCATGGGCATCATCTTCCTGCTCCTGATCATCATGGCCATGCTCAGCTTGTTTGTTTGGTTCAGGCAGAGACAGAGAGACAAAGGACAGGAAATGCCCAGTGTTTCGTACACCCCAGCTCTGCGTGTCACCAACACTGACTACTCTCTTTCTG
Seq C2 exon
ATTACATAAAGGCCTCGATGTGTAGCTCCAGCTCGTGTTCCCTCAATAGTGAGAACCCGTACGCCACCATCCGAGATCCTCCCAGCCTGGCCTGCAAGCACACGGAGAGCAGTTATGTGGAGATGAAGTCTCCCGCTCACAGAGACCTGACCTTCTGCTCCAGCACCAGCACAACCCTCACCACTGCCAGCAGGAACGTCTATGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686-'19-28,'19-19,21-28=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.146
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(27.7=29.5),PF0005319=Laminin_EGF=PU(82.9=65.9)
A:
PF0005319=Laminin_EGF=PD(14.3=6.3),PF153301=SIT=PU(61.9=65.8)
C2:
PF153301=SIT=PD(51.4=78.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGCAGCTGTGTGAATGT
R:
CATAGACGTTCCTGCTGGCAG
Band lengths:
304-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]