RnoEX0053786 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70170521-70178302:+
Coord C1 exon
chr8:70170521-70170649
Coord A exon
chr8:70171936-70172172
Coord C2 exon
chr8:70178246-70178302
Length
237 bp
Sequences
Splice sites
3' ss Seq
AGGCCTCCCTCTGCCCACAGCTG
3' ss Score
10.04
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GATGTGCCCCTGGAACCTTTGGATACGGGTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCATGTCACTGGTACCTGTTACTGCAGCCCGGGATTCAAAGGAATCAGGTGTGACCAAG
Seq A exon
CTGCCCTCATGATGGATGAGCTGAATCCATACACCAAGATCAGTCCAGCTCTGGGAGCAGAGCGGCACTCGGTGGGTGCTGTCACAGGCATCATCCTCCTGTTGTTCCTGGTTGTGGTGTTGCTGGGCCTGTTTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCTCCTCGAGTCTCCTACACCCCAGCCATGAGGATGACCAGCACAGACTACTCTCTCTCAG
Seq C2 exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634_MULTIEX1-2/5=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.297
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(82.9=65.9)
A:
PF0005319=Laminin_EGF=PD(14.3=6.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGCCCCTGGAACCTTTG
R:
AGCCTTTGTCCATAATGTATGTGT
Band lengths:
180-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]