RnoEX0053787 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70171936-70178302:+
Coord C1 exon
chr8:70171936-70172172
Coord A exon
chr8:70173495-70173613
Coord C2 exon
chr8:70178246-70178302
Length
119 bp
Sequences
Splice sites
3' ss Seq
GCTCCTTGTTCTCTTCCCAGATT
3' ss Score
9.48
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGCCCTCATGATGGATGAGCTGAATCCATACACCAAGATCAGTCCAGCTCTGGGAGCAGAGCGGCACTCGGTGGGTGCTGTCACAGGCATCATCCTCCTGTTGTTCCTGGTTGTGGTGTTGCTGGGCCTGTTTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCTCCTCGAGTCTCCTACACCCCAGCCATGAGGATGACCAGCACAGACTACTCTCTCTCAG
Seq A exon
ATTTGTCTCAAAGTAGCAGCCATGCCCAGTGCTTTTCCAATGCCAGCTACCACACACTGGCGTGCGGGGGGCCTGCCACCAGCCAGGCAAGCACTCTGGACAGGAACAGCCCCACCAAG
Seq C2 exon
GCACTTGTGGAATGGACAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634_MULTIEX1-3/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.325 C2=0.297
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(14.3=6.2)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACACCAAGATCAGTCCAGC
R:
TGTGTTCTGACGTCTGTCCAT
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]