DreEX6065235 @ danRer10
Exon Skipping
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19168920-19174242:-
Coord C1 exon
chr18:19174009-19174242
Coord A exon
chr18:19171592-19171710
Coord C2 exon
chr18:19168920-19168931
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTCTCTCTCCTTCAGAAA
3' ss Score
12.73
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGGCTCTAGTGATGGAGGAACTCAACCCGTACACTAAGATCAGCCCCGCTCTGGGTTCAGAACGCCAGTCCGCAGGCGCCGTCATGGGCATCATCTTCCTGCTCCTGATCATCATGGCCATGCTCAGCTTGTTTGTTTGGTTCAGGCAGAGACAGAGAGACAAAGGACAGGAAATGCCCAGTGTTTCGTACACCCCAGCTCTGCGTGTCACCAACACTGACTACTCTCTTTCTG
Seq A exon
AAACGTCTCAGAGCAGCAGCAGTGGCCAGTGCTTCTCCAATCCCAGCTACCACACTGTGGCACAGTGCAACATCTCATCCTCCATAACTAACAACCTGGACGGCACTCTCACTCTGAAG
Seq C2 exon
AAAAATACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686-'21-21,'21-20,22-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.025 C2=0.500
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(14.3=6.3),PF153301=SIT=PU(61.9=65.8)
A:
PF153301=SIT=PD(36.9=77.5)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]