MmuEX0028587 @ mm10
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64695364-64697908:+
Coord C1 exon
chr9:64695364-64695482
Coord A exon
chr9:64697307-64697373
Coord C2 exon
chr9:64697807-64697908
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGGGTCTCCTCTCCAAACAGCTC
3' ss Score
9.45
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATTTGTCTCAAAGTAGCAGCCATGCCCAGTGCTTTTCCAATGCCAGCTACCACACACTGGCGTGTGGGGGGCCTGCCACCAGCCAGGCCAGCACTCTGGACAGGAACAGCCCCACCAAG
Seq A exon
CTCAGTAACAAGTCCCTTGACAGAGACACAGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAG
Seq C2 exon
ACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-'36-36,'36-35,37-36
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.174 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTTTTCCAATGCCAGC
R:
GCGGCTGAGGTGTCTAAGTTC
Band lengths:
173-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types