BtaEX0021926 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50725162-50771824:+
Coord C1 exon
chr16:50725162-50725266
Coord A exon
chr16:50753415-50753537
Coord C2 exon
chr16:50771702-50771824
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCCGCATCTCCCCCTCGCAGATG
3' ss Score
11.38
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCGTGTGCAGCTCCGGCCTCTGCTTTAACGGCGGCCACTGCGTGTCCGGCTCAGCCCAGCCGTGCCGCTGTCCCTCTGGCTTCCAGGGTCCTCGCTGTCAGCATG
Seq A exon
ATGTGAATGAGTGTGCCACTGGCAACGCAGGCTGTGAGGGTGAGTGTCACAACACCGTGGGGGGCTTCTACTGCCGCTGCCCGCCTGGCCGCCAGCTGCAGGGAGACGGCAAGACCTGCCGAG
Seq C2 exon
ACGTGGACGAGTGCCAGGTGCACAATGGCGGCTGCCAGCACCGGTGTGTGAACACCCCAGGCTCCTACTTCTGCGAGTGCAAGCCCGGCTTCCGTCTCCACGCGGACGGCAGGACCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Inclusion Isoform:
ENSBTAT00000027771fB4212
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGCCTCTGCTTTAAC
R:
TCCGCGTGGAGACGGAAG
Band lengths:
202-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development