MmuEX0028596 @ mm9
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:153556767-153616633:+
Coord C1 exon
chr4:153556767-153556876
Coord A exon
chr4:153598210-153598332
Coord C2 exon
chr4:153616511-153616633
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATCTGCGTTTCTTCCCACAGATG
3' ss Score
13.32
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GACTGTGTACTATATGAGCTACAGGCAGGTGTATGCCACAGAGGCTCGCACTGTGTTCAGGTGCTGTCCTGGCTGGAGCCAGAAGCCTGGCCAGGAAGGCTGCCTCTCAG
Seq A exon
ATGTGGATGAATGTGCCAATGCCAACGGGGGCTGTGAGGGCCCGTGCTGCAACACCGTGGGTGGCTTTTACTGTCGCTGCCCACCCGGCTACCAGCTGCAGGGTGATGGCAAAACGTGCCAAG
Seq C2 exon
ATGTGGATGAATGTCGATCACACAATGGTGGTTGTCAACACAGGTGTGTGAATACCCCCGGCTCTTACCTCTGTGAGTGCAAACCCGGCTTCCGGCTCCACACAGATGGCAGGACCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126622=cEGF=PU(83.3=47.6)
C2:
PF126622=cEGF=PD(12.5=7.1),PF146701=FXa_inhibition=WD(100=85.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTACTATATGAGCTACAGGCA
R:
CAGGTCCTGCCATCTGTGTG
Band lengths:
227-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types