GgaEX1002282 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19842938-19934453:-
Coord C1 exon
chr9:19934349-19934453
Coord A exon
chr9:19860356-19860478
Coord C2 exon
chr9:19842938-19843060
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTCATACTTTTACCAACAGATG
3' ss Score
8.46
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TGCTCTGTGCTGCTGACACTTGCTTCAATGGAGGGAAGTGTTCTGAAGAAGGACCTCACATGTGCCAGTGTCCTGCGGGATTTCAGGGTCCTCGCTGCCAGTATG
Seq A exon
ATGTAAATGAGTGCAGCACTGAGAACGGAGGCTGTCAGGACCAGTGCTGTAACACCATCGGCAGCTACCACTGCAAATGTCCAGCTGGCCAGAAACTGGGGGAAGATGGAAAATCGTGCGGAG
Seq C2 exon
ATATAGATGAGTGTGCAGAGGTGAATGGAGGCTGCCAGCAGGGCTGCATCAACACCCACAGCTCTTTCCACTGCCACTGTTGGGCAGGATACAGGCTGCACTCTGATGGGCGCACGTGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=86.1)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
ENSGALT00000015394fB4059
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTGCTGACACTTGCTTC
R:
CACGTGCGCCCATCAGAG
Band lengths:
218-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]