DreEX0087108 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35407105-35435092:+
Coord C1 exon
chr15:35407105-35407209
Coord A exon
chr15:35430345-35430467
Coord C2 exon
chr15:35434970-35435092
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTTCTTTCTCAGACA
3' ss Score
11.09
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGTGTGTTCCTCTGGTACCTGTTTTAATGGTGGGAAGTGCTCTGAGACCAGCGATCACCTATGTCAGTGTCCAGAAGGGTTTGAGGGAACGCGTTGTCAATATG
Seq A exon
ACATAAATGAGTGTGCGGTCAGTAATGGAGGTTGTGAAGGCACATGTTGTAACTCTATCGGCAGCTATTTCTGCAAATGTCCTGGCGGCAGTAAACTCAGAGATGATGGGAAATCTTGCCAAG
Seq C2 exon
ATATAGATGAGTGTGAGGAGATGAATGGCGGCTGCCAGCAGACTTGTGTGAACACACTTGGTTCCTATCACTGTGAGTGCAGTGAGGGTTTCCGCATACATGCTGATGCTCGCACATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=83.3)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGTTCCTCTGGTACCTGT
R:
TATGCATGTGCGAGCATCAGC
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]