MmuEX0016416 @ mm9
Exon Skipping
Gene
ENSMUSG00000063600 | Egfem1
Description
EGF-like and EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:1922990]
Coordinates
chr3:29052419-29481951:+
Coord C1 exon
chr3:29052419-29052523
Coord A exon
chr3:29412810-29412932
Coord C2 exon
chr3:29481829-29481951
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATTTATCTATCCAATGGCAGATA
3' ss Score
7.1
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
CTCTCTCTTCCTTGGGAACTCATTTCAGTGGAAGGGAGTGCTCGTATCAGGACACTCGGCAGTGCCTTTGTTCACAAGGATTTCATGGACCCCACTGTCAATATG
Seq A exon
ATATAAATGAATGTGCTGTTGACAATGGAGGCTGTCGAGACCGATGCTGTAATACGATTGGCAGTTATTACTGCAGATGTCAAGCTGGCCAAAAGCTGGAGGAAGATGGCAGAGGATGCGAAG
Seq C2 exon
ATGTGGATGAGTGTGCCGTGGTGAACGGAGGCTGCCAGCAGCGCTGTATTAACACTCTGGGCACCTTCCACTGTGAGTGTGACACAGGATACAGACGCCATGCTGACGAACGTACCTGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063600_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=36.1)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCTTCCTTGGGAACTCA
R:
TATGCAGGTACGTTCGTCAGC
Band lengths:
227-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types