MmuEX6070419 @ mm9
Exon Skipping
Gene
ENSMUSG00000063600 | Egfem1
Description
EGF-like and EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:1922990]
Coordinates
chr3:29052419-29412932:+
Coord C1 exon
chr3:29052419-29052523
Coord A exon
chr3:29256067-29256117
Coord C2 exon
chr3:29412810-29412932
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGAAATCTCTATCCTCCAGAGA
3' ss Score
7.22
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTCTCTCTTCCTTGGGAACTCATTTCAGTGGAAGGGAGTGCTCGTATCAGGACACTCGGCAGTGCCTTTGTTCACAAGGATTTCATGGACCCCACTGTCAATATG
Seq A exon
AGAAGAACAAACACCTAGAAAGCGAACTGACACCTGGATTCCTACAGAAAA
Seq C2 exon
ATATAAATGAATGTGCTGTTGACAATGGAGGCTGTCGAGACCGATGCTGTAATACGATTGGCAGTTATTACTGCAGATGTCAAGCTGGCCAAAAGCTGGAGGAAGATGGCAGAGGATGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063600-'5-9,'5-7,6-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=36.1)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCCTTTGTTCACAAGG
R:
AGCTTTTGGCCAGCTTGACAT
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: