BtaEX0022031 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016430 | METTL8
Description
Bos taurus methyltransferase like 8 (METTL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001075288]
Coordinates
chr2:25070936-25140851:+
Coord C1 exon
chr2:25070936-25071127
Coord A exon
chr2:25117240-25117394
Coord C2 exon
chr2:25140619-25140851
Length
155 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTGAAACTTTCCAGGTA
3' ss Score
6.68
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGCCGCCTCTTGGTCTGTGTTCCGTGTTCGCTCCGTGCACTCAGGGGTCCGTCCCTTGCCGCCCCTGTGCCCCCACGCTTGTCAGTCCCCGACTTTCGCTCTGGGAGCCCTGGCTGGGTGTCGAGAGGGGGTCTGTGTCGTGTGCGACCGCCCCTCCCCTCCCCACAAGGCAGCGTCTTGTGAAAAAGAAAG
Seq A exon
GTACCTATTAGGATGAATGTGATTTGGAGAAATTATATTTCCTGTCCAAGGATGAGAAAAGTACCTCACAGATACCAAAGTGGTTGTCACCCAGTGGCCCCTCTGGGATCAAGGATTTTAACTGATCCAACAAAAGTTTTTGAACATAACATGTG
Seq C2 exon
TTAAGTATGAGAGTGAAGCCAGTAAATATTGGGACACGTTTTACAAGATTCATAAGAATAAGTTTTTCAAAGATCGTAATTGGCTATTGAGGGAATTTCCTGAAATTCTTCCAGTTGGTCAGAAAACTGAAGAGAAGGTGAAAGAATTATCATGGAATCATGTAAAAATTAATGCTGAAAGTTTTTTCTCAAAAATGCACTGCCCTACTATGCCTGAAGAAAAAAATCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016430_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134891=Methyltransf_23=PU(14.0=21.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCAGCGTCTTGTGAAAA
R:
AGGCATAGTAGGGCAGTGCAT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development