MmuEX0028767 @ mm9
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70831541-70893640:-
Coord C1 exon
chr2:70893428-70893640
Coord A exon
chr2:70856277-70856431
Coord C2 exon
chr2:70831541-70831632
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTTGTGACTTTGCAGGTC
3' ss Score
8.72
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGGGTCGGGTAGCCTTCCGGGCTGCACGCGGTAAACCTGGATAGCTTTGGTGGGTGCTGTGCAGCCACCTGGTGGTGTCGCTTCACCTGTGTGTCCCAGGAAGCAGTCCCTTTCTGCCCTGGTCGTGGGACGACTGCCAACCCCTCCTTTGGCCCTGCAAGGCTCTGGCCACGCGTCCAGAGGGGCGTTGTGGCCAGTGGGACCCTCCAAAG
Seq A exon
GTCCTGCTTAGGATGAATGTGATTTGGAGAAGTTGCATTTGCCGACTGAGGCAGGGGAAGGTACCACACCGATGCCAGAGTGGCGTCCACCCGGTAGCCCCTCTGGGGTCGAGGATTTTAACTGACCCCGCCAAAGTTTTTGAACACAACATGTG
Seq C2 exon
GGATCACATGCAGTGGTCTAAAGAAGAAGAAGACGCAGCTAGAAAAAAGGTAGAGGAAAACTCAGCCACACGAGTCGCTCCAGAAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.074 C2=0.822
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCTTTGGTGGGTGCTGTG
R:
CGACTCGTGTGGCTGAGTTTT
Band lengths:
249-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: