RnoEX6017364 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57584331-57646572:-
Coord C1 exon
chr3:57646440-57646572
Coord A exon
chr3:57607541-57607695
Coord C2 exon
chr3:57584331-57584422
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGGTGACTTTTGCAGGTC
3' ss Score
9
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TCCCGTGTGTCCTGCACCAAAGAAGCAGTCCCTTTCTGCCCTGGTGGTGGGACGCTTGCCAACCCCACCTTTACTCTACAAGGCTCTGGCCACGTGTCCAGAGGGGCGTTGTGTCCAGTGGGACCCTCCAAAG
Seq A exon
GTCCTGTTTGGGATGAATGTGATTTGGAGAAATTGCATTTGCCGTCTGAGGCAAGGGAAGGTGCCACACAGATGTCAGAGCGGTGTCCACCCGGTGGCCCCTCTGGGGTCAAGGATTTTAACTGACCCCACCAAAGTTTTCGAACACAACATGTG
Seq C2 exon
GGATCACATGCAGTGGTCCAAAGAGGAAGAAGACGAAGCTAGAAAAAAAGTAGAGGAAAACTCAGCCACACGAGTCGCCCCAGAAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382-'1-3,'1-0,8-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.854
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGCACCAAAGAAGCAG
R:
CTTGCTCTTCTGGGGCGACT
Band lengths:
218-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]