DreEX6034827 @ danRer10
Exon Skipping
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3547662-3550022:+
Coord C1 exon
chr9:3547662-3547813
Coord A exon
chr9:3548353-3548503
Coord C2 exon
chr9:3549931-3550022
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATAATGAATTATGTGTTCAGATG
3' ss Score
4.93
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
Exon sequences
Seq C1 exon
GTTTTTACTGGTGCGGGTGCACGCAGGGGGGCGCTGTGCACGTGGAGACGGGAGCGCGCACATAGAGGACGGACGATTCTTCTCACACAACTCATAAAAATACACTTGACTACCACTATTTCTGAGGAATAACCTTCGGAAATGGCGTATAA
Seq A exon
ATGAGTGTGGAGAGATGAGGGGGCTCGTGAAGCTGACTGCCCGCGCTGTGAGCTTTATTCCCTGCAGGCAGTGCGGTGGAGGAAGACCACCCGCTCCATTAGGAGGAAGAATCCTGTCCAACCCTGATGACGTCTTTAAGCATAACATGTG
Seq C2 exon
GGATCATGTGCAGTGGACTGAAGAGGAGAGAGAGAAAGCCCGACAGAAGGCAGAAGAAAACTCTGAAGAGAAGATTCCTGTCGAAGAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359-'0-4,'0-0,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.225 C2=0.875
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTACTGGTGCGGGTGC
R:
ACTGCTCTTCGACAGGAATCT
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]