GgaEX7005976 @ galGal4
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17539023-17547275:+
Coord C1 exon
chr7:17539023-17539123
Coord A exon
chr7:17545515-17545673
Coord C2 exon
chr7:17547184-17547275
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGAGTTAATTGTATTTTCAGATC
3' ss Score
7.26
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AGCTGCTTCCTAAAAGTTGTCACCATCAACTGCATTTGCCAGAAGAGAAAGTGGACTTCTGGAGACAAGCTTGTGTTCTTTCCTCCAATGGCCCAAATGGG
Seq A exon
ATCTCCGAACAAAATGAATTTCATTACAAGGCTTTCTGCTTTGTGTCTGAGAAAAAAAAGCAATATGCAGCAAAGGTACCAGAGTAGTCGACGGCCAGCTGTTCCACTTGGATCACGGATTTTAACAGACCCTTCTAAAGTTTTTGAGCATAACATGTG
Seq C2 exon
GGACCATATGCAATGGTCACAGGAAGAGGAGGAGCATGCCAAGGAAAAAGCAGCAGAGAACTCACTTGTGAAAGTCCATTTGGAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'3-2,'3-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.537 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000015575fB9374
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTTCCTAAAAGTTGTCACC
R:
TGGTCTTCCAAATGGACTTTCACA
Band lengths:
190-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]