BtaEX0022128 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026501 | MGC127055
Description
Bos taurus cytochrome P450, family 2, subfamily D, polypeptide 6 (CYP2D14), mRNA. [Source:RefSeq mRNA;Acc:NM_174529]
Coordinates
chr5:113623996-113625476:-
Coord C1 exon
chr5:113625376-113625476
Coord A exon
chr5:113624667-113624838
Coord C2 exon
chr5:113623996-113624148
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCTCGACCTTTGGCCTGCAGCTG
3' ss Score
7.47
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
Exon sequences
Seq C1 exon
GGAAGAGGAACTGGGCCAAGAAGAGGAGGCGGATCCGAGAGGCTTCCTGAGGGAGGGCGTCTGTTAAGGGCCCGAGAACAGATTGGAGTTTCCAAACAGAG
Seq A exon
CTGCGGCGCCGCTTCGGGAACGTGTTCAGCCTGCAGCAGGTCTGGACGCCGGTAGTCGTGCTCAACGGGCTGGCGGCTGTGCGCGAGGCACTGGTGTACCGCAGCCAGGACACTGCCGACCGTCCACCTCCGGCCGTCTACGAGCACCTGGGTTACGGGCCGCGCGCCGAAG
Seq C2 exon
GAGTGATCCTGGCGCGATATGGGGACGCCTGGCGCGAGCAGCGGCGCTTCTCCCTGACCACCCTGCGCAACTTCGGCCTGGGGAAGAAGTCACTGGAGCAGTGGGTGACCGAGGAGGCCTCGTGCCTCTGTGCCGCCTTCGCCGACCAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026501-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAACTGGGCCAAGAAGA
R:
GAAGGCGGCACAGAGGCA
Band lengths:
238-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development