RnoEX0025886 @ rn6
Exon Skipping
Gene
ENSRNOG00000008988 | Cyp2d2
Description
cytochrome P450, family 2, subfamily d, polypeptide 2 [Source:RGD Symbol;Acc:2471]
Coordinates
chr7:123654430-123655896:-
Coord C1 exon
chr7:123655608-123655896
Coord A exon
chr7:123654817-123654988
Coord C2 exon
chr7:123654430-123654582
Length
172 bp
Sequences
Splice sites
3' ss Seq
TACTCTGTCCCCTATTTCAGCTT
3' ss Score
9.81
5' ss Seq
AAGGCAAAG
5' ss Score
1.31
Exon sequences
Seq C1 exon
TTTAAGGGACCAGGTTCCCAGTCTGTTGTAAGAGGATCTTTCCTGATTCTAAGTGTCTGGACAAGTATTCCTTCAAAAGCCTGCAAGCCGTGGGGCAGCCATGGGGCTGCTGATTGGAGATGACCTCTGGGCTGTGGTCATATTCACAGCCATCTTCTTGCTTCTGGTGGACCTGGTGCACCGGCACAAATTCTGGACTGCCCACTACCCTCCCGGCCCTGTGCCACTCCCTGGGCTGGGAAACCTGCTGCAGGTGGACTTTGAGAACATGCCATATAGCTTATACAAG
Seq A exon
CTTCGAAGCCGCTATGGTGACGTGTTCAGCCTACAGATAGCCTGGAAGCCTGTAGTTGTGATCAACGGGCTGAAGGCCGTGCGGGAACTGCTGGTGACCTATGGAGAGGACACTGCTGACCGCCCCCTACTGCCCATCTATAATCACCTGGGCTATGGGAACAAATCAAAAG
Seq C2 exon
GTGTGGTCCTTGCACCTTACGGACCTGAGTGGCGAGAGCAGAGACGATTCTCTGTGTCCACCCTGCGTGACTTCGGCGTGGGCAAGAAATCGCTGGAGCAGTGGGTGACAGAGGAGGCCGGCCACCTCTGTGACACCTTCGCCAAGGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008988_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTGATTGGAGATGACC
R:
AGGGTGGACACAGAGAATCGT
Band lengths:
249-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]