GgaEX1004280 @ galGal3
Exon Skipping
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111595948-111598076:+
Coord C1 exon
chr3:111595948-111596133
Coord A exon
chr3:111597564-111597726
Coord C2 exon
chr3:111598057-111598076
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTGTTATCTTCTTCTGTCAGCTG
3' ss Score
8.13
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGGACTGGAGCAACTGCACTACCATGGCTTTAGTGTTCATCCTGACTTTTTTGTTCATTATGAAAATTGGAGGTCTCTGGAGTAACCACTGGAGAAAGAACTTTCCCCCAGGACCAAGGGCGTTACCCATCATTGGAAATCTTCATTTGTTTGATTTGAAGAGACCCTACAGGACTTATCTACAG
Seq A exon
CTGTCAAAAGAATATGGTCCTGTCTTCAGCGTTCAGATGGGGCAAAGGAAAATAGTAGTGATCTCTGGGTATGAGACAGTGAAGGAAGCTCTCATAAACCAGGCAGATGCCTTTGCAGAGAGACCAAAAATCCCAATCTTTGAAGATCTGACCAGAGGAAATG
Seq C2 exon
GGATTGTTTTTGCTCACGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=41.9)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(1.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGAGCAACTGCACTACC
R:
ACCGTGAGCAAAAACAATCC
Band lengths:
203-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]