BtaEX6082499 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8U6]
Coordinates
chr18:50450078-50453116:-
Coord C1 exon
chr18:50452937-50453116
Coord A exon
chr18:50451960-50452122
Coord C2 exon
chr18:50450078-50450227
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTACGTCTTCCTTCACTCAGCTC
3' ss Score
7.39
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATGGAGCTGGGAGGGGCCTTCACCATCTTTCTGGCGCTCTGTTTGTCTTGTCTTCTCATCCTCATCGCCTGGAAACGGATGAGCAAAGGGGGGAAGCTGCCGCCTGGTCCCACACCGATACCTTTCCTGGGGAACGTGTTGCAAGTTCGTACTGACGCCACTTTTCAGTCTTTCATGAAG
Seq A exon
CTCAAGGAGAAATACGGTCCAGTCTTCACTGTGTACATGGGGCCCCGGCCAGTGGTTGTTTTATGTGGACATGAAGCAGTGAAGGAGGCCCTGGTAGACCGAGCAGATGAGTTCAGTGGCCGTGGAGAACTGGCTTCAGTAGAGCGAAACTTCCAAGGTCATG
Seq C2 exon
GTGTAGCACTGGCTAATGGAGAACGATGGAGGATTCTCCGACGCTTCTCCCTGACCATTCTTCGGGACTTCGGGATGGGAAAGAGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTTCCTACTAGTGGAATTACGCAAGACCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003272-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACGGATGAGCAAAGGG
R:
CCACTAGTAGGAAGCCAGCCT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]