DreEX0025429 @ danRer10
Exon Skipping
Gene
ENSDARG00000102981 | cyp2k16
Description
cytochrome P450, family 2, subfamily K, polypeptide16 [Source:ZFIN;Acc:ZDB-GENE-041010-37]
Coordinates
chr3:12613606-12619130:+
Coord C1 exon
chr3:12613606-12613708
Coord A exon
chr3:12618223-12618385
Coord C2 exon
chr3:12618981-12619130
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTACTTTTTTATCAGATG
3' ss Score
8.75
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ATCTCAAAGTGACGAAAATGAACCTCCAGGGCCAAAACCGTTGCCACTGTTGGGAAATCTACTCATGCTGGATGTCAACAAACCACATTTGAGCCTGTGTGAG
Seq A exon
ATGGCAAAGCAGTTCGGCCCAGTTTTTAAAGTCTACTTTGGTCCGAAGAAAGTGGTTGTGCTTGCCGGCTACAAAGCAGTGAAGCAAGCGCTTGTTAATTATGCAGAAGCATTTGGAGACAGAGAAATCATGCCACTTTTCCATGATTTCACCAAAGGTCATG
Seq C2 exon
GAATAATATTTGCCAATGGAGAGAGCTGGAGAGAGATGAGACGGTTTGCTCTCACCAATTTACGAGACTTTGGGATGGGAAAGAAAAAAATTGAGGAGAAAATCATCGAGGAAACATGCCATTTACGAGAGGAGTTTGAGAAGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102981-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=74.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAAATGAACCTCCAGGGC
R:
CTTCAAACTTCTCAAACTCCTCTCG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]