MmuEX6009192 @ mm9
Exon Skipping
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:27593946-27596567:+
Coord C1 exon
chr7:27593946-27594125
Coord A exon
chr7:27594702-27594864
Coord C2 exon
chr7:27596418-27596567
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTATCTTTCTTCACTCTCAGCTC
3' ss Score
8.41
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATGATGCTGGGAGGAGCCTTCAGCATCTTTATGGCACTTTGTTTGTCTTGCCTGCTCATCCTGATTGCTTGGAAGAGGACCAGTAAGGGAGGAAAGCTGCCCCCCGGCCCCACACCAATACCGTTTTTGGGAAACTTCTTACAAGTCCGCACTGATGCCACATTTCAGTCCTTCCAGAAG
Seq A exon
CTCCAGAAAAAATATGGCTCTGTGTTCACTGTGTACTTCGGTCCAAGGCCAGTGGTTGTCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGCCGTGGTGAAATGCCTACACTAGAGAAGAACTTCCAAGGTTATG
Seq C2 exon
GTTTAGCTCTGTCCAATGGAGAACGATGGAAGATTCTTCGGCGTTTTTCCCTGACCGTCCTTCGAAACTTTGGGATGGGGAAGCGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTACCTACTGGAGGAGCTCCATAAGGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTGCTCATCCTGATTGC
R:
CTCCTGGATCCGCTCCTCAAT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: