DreEX6074626 @ danRer10
Exon Skipping
Gene
ENSDARG00000101423 | cyp2y3
Description
cytochrome P450, family 2, subfamily Y, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-050522-490]
Coordinates
chr15:102166-104338:-
Coord C1 exon
chr15:104152-104338
Coord A exon
chr15:102397-102559
Coord C2 exon
chr15:102166-102315
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTTCTTTTAATCAGTGG
3' ss Score
7.51
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
CTGATCAGTCAGAGGAATGGAGCTCTCAAGCTCACTACTGCTGGTTTTGGTCTTGACTGTGTTGATGTTGATCAGATGGAGGAGGAAGGAGAACGGACTTTCTTTGCCCCCGGGGCCACTGGCACTGCCACTGATCGGAAACTTACTAACACTGGACAAAAGTGCCCCATTTAAGAGCTTTATGAAG
Seq A exon
TGGAGAAAAACCTATGGGTCTGTGATGACGGTGCACCTCGGGCCTCAGAGAATGGTGGTACTGGTGGGTTACGAAACAGTGAAGGAAGCTCTGGTGGACCAGGCTGACGACTTTGCACCCAGGGCTCCCATTCCCTTTATGAACAGAATTGTGAAGGGCTACG
Seq C2 exon
GTCTGGCCATCAGCAATGGTGAACGCTGGCGTCAACTGAGGCGGTTCACGCTCACCACACTGAGGGATTTTGGAATGGGACGCAAACGAATGGAGCAGTGGATTCAAGAAGAGAGCAGATACTTGCTCAAGAGTTTTGAAGAAACCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101423-'0-2,'0-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAAGCTCACTACTGCTG
R:
GCGTCCCATTCCAAAATCCCT
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]