BtaEX6082506 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50422367-50424483:-
Coord C1 exon
chr18:50424289-50424483
Coord A exon
chr18:50423613-50423775
Coord C2 exon
chr18:50422367-50422516
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCCCACTCATCTCTATCAGATC
3' ss Score
8.86
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTCCCAGTTGCCACCATGCTGGCCTCAGGGCTGCTCCTCGTGGCTTTGCTGGCCTGTCTGACTATCATGGTCTTGATGTCTGTCTGGCGGCAAAGGAACCTCAAAGGGAAATTGCCTCCAGGGCCCACTCCTCTGCCCTTCATCGGGAACTACCTGCAGCTGAACACCGAGCAGATGTGCAACTCCCTCATGAAG
Seq A exon
ATCAGCGAGCACTACGGCCCTGTGTTCACGGTCCACCTGGGGACCCGGCAGATTGTGGTGCTGTGTGGCTATGATGCTGTGAAGGAGGCTCTGGTGGACCAGGCTGAAGAATTCAGTGGGCGAGGCAAGCAGGCTACCTTTGACTGGCTCTTCAAAGGCTATG
Seq C2 exon
GCGTGGCGTTCAGCAACGGGGAGCGCGCCAAGCAGCTCCGGCGCTTCTCGATTACAACTCTGCGGGACTTCGGCGTGGGCAAGCGCGGCATCGAAGAGCGCATCCAGGAGGAGGCGGGCTTCCTCATCGAGGCCTTCCGGGGCACTCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815-'0-4,'0-0,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(6.4=43.3)
A:
PF0006717=p450=FE(13.3=100)
C2:
PF0006717=p450=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGCCTGTCTGACTATCA
R:
CCTGGATGCGCTCTTCGATG
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]