MmuEX1007855 @ mm10
Exon Skipping
Gene
ENSMUSG00000005547 | Cyp2a5
Description
cytochrome P450, family 2, subfamily a, polypeptide 5 [Source:MGI Symbol;Acc:MGI:88597]
Coordinates
chr7:26835305-26836824:+
Coord C1 exon
chr7:26835305-26835543
Coord A exon
chr7:26835795-26835957
Coord C2 exon
chr7:26836675-26836824
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTAACCTCCATCAGATC
3' ss Score
6.76
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGATGTATAAAAGCAAGCTAATTCAGCCATCACTGTCTGTCTATCACCCCACCGCCACCATGCTGACCTCAGGACTCCTCCTGGTGGCTGCAGTGGCCTTCCTCAGCGTCCTGGTCTTGATGTCTGTCTGGAAGCAGAGAAAGCTCTCAGGAAAGCTGCCTCCAGGACCCACCCCACTGCCCTTCATTGGGAACTTCCTTCAGCTGAACACAGAGCAAATGTACAACTCTCTCATGAAG
Seq A exon
ATCAGCCAACGTTATGGTCCTGTATTCACCATCTACCTGGGACCTCGCCGAATTGTGGTGCTGTGCGGACAGGAGGCAGTCAAGGAAGCTCTGGTGGACCAAGCTGAGGAATTCAGCGGGCGGGGCGAGCAAGCTACCTTCGACTGGCTTTTCAAAGGCTATG
Seq C2 exon
GCGTAGCCTTCAGCAGCGGGGAGCGAGCCAAACAGCTAAGGCGCTTCTCCATCGCCACGCTGCGGGACTTCGGCGTGGGGAAGCGTGGCATCGAGGAGCGCATCCAAGAGGAGGCGGGCTTTCTCATCGATTCATTTCGGAAGACGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005547_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTCTATCACCCCACCG
R:
CTTAGCTGTTTGGCTCGCTCC
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types