DreEX6074621 @ danRer10
Exon Skipping
Gene
ENSDARG00000068493 | si:zfos-411a11.2
Description
si:zfos-411a11.2 [Source:ZFIN;Acc:ZDB-GENE-131119-33]
Coordinates
chr15:92066-92917:-
Coord C1 exon
chr15:92731-92917
Coord A exon
chr15:92305-92467
Coord C2 exon
chr15:92066-92215
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATTCTGTTCTCTAAAACAGTGG
3' ss Score
6.4
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTGATCGGTAAGAGGAATGGAGCTCTCAAGCTCACTGCTGCTGGTTTTGGTCTTGACTGTGTTGATGTTGATCAGATGGAGGAGGAAGGAGAACGGACTTTCTTTGCCCCCGGGGCCACTGGCACTGCCACTGATCGGAAACTTACTAACAGTGGAAACAAGTGCACCATTTAAGAGCTTTATGAAG
Seq A exon
TGGAGCAAATCCTATGGGCCGGTGATGACGGTGCACATCGGGACTCAGAGAATGGTGGTTCTGGTGGGTTATGAAACAGTAAAAGAGGCTCTGGTGGACCAGGCTGAAGACTTTGCATCCAGAGCTCCCATTCCTTTTACCAACAGAGTTCTAAGAGGCTATG
Seq C2 exon
GTCTGATCATCAGCAATGGTGAACGCTGGCGTCAACTGAGGCGGTTCACGCTCACCACACTGAGGGATTTTGGAATGGGACGCAAACGAATGGAGCAGTGGATTCAAGAAGAGAGCAGATACTTGCTCAAGAGTTTTGAAGAAACCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068493-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGCTGGTTTTGGTCTT
R:
TCGTTTGCGTCCCATTCCAAA
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]