RnoEX6001785 @ rn6
Exon Skipping
Gene
ENSRNOG00000020817 | Cyp2a3
Description
cytochrome P450, family 2, subfamily a, polypeptide 3 [Source:RGD Symbol;Acc:2465]
Coordinates
chr1:83653234-83654687:+
Coord C1 exon
chr1:83653234-83653427
Coord A exon
chr1:83653694-83653856
Coord C2 exon
chr1:83654538-83654687
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGATCATTCTCCTCCATCAGATC
3' ss Score
8.19
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATCCCATCGCCACCATGCTGGCCTCAGGACTCCTTCTGGTGGCCTCAGTGGCCTTCCTCAGTGTCCTGGTCTTGATGTCTGTCTGGAAGCAGAGGAAGCTCTCAGGGAAGCTGCCTCCTGGACCCACCCCATTGCCCTTCATCGGGAACTACCTCCAGCTGAACACAGAGAAAATGTACAGCTCTCTCATGAAG
Seq A exon
ATCAGCCAACGTTACGGTCCTGTATTCACCATCCACCTGGGACCTCGCCGAGTTGTGGTGCTGTGCGGACAGGAGGCAGTCAAGGAGGCTCTGGTGGACCAAGCTGAGGAATTCAGTGGTCGGGGAGAGCAGGCCACCTTCGACTGGCTTTTCAAAGGCTATG
Seq C2 exon
GGGTAGCCTTCAGCAGCGGGGAGCGAGCCAAACAGCTAAGGCGCTTCTCCATCGCCACGCTGCGGGACTTCGGCGTGGGCAAGCGTGGCATCGAGGAGCGTATCCAAGAGGAGGCGGGCTTTCTCATCGAGTCATTTCGAAAGACGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020817-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
83%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCTCAGTGTCCTGGTCT
R:
CTTGGATACGCTCCTCGATGC
Band lengths:
251-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]