HsaEX1010852 @ hg38
Exon Skipping
Gene
ENSG00000198077 | CYP2A7
Description
cytochrome P450 family 2 subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:2611]
Coordinates
chr19:40880479-40882752:-
Coord C1 exon
chr19:40882031-40882752
Coord A exon
chr19:40881589-40881751
Coord C2 exon
chr19:40880479-40880628
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCCCACTCGCCTCCATCAGTTC
3' ss Score
5.81
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CAAGTGCTCCCCTATGCAAATATTCCAAACTCTTCAGTTCTACAGTTTATCGGTTGCCCCCTCCTAAATCCACAGCCCTGCGGCACCCCTCCTGAAGTACCACAGATTTAGTCTGGAGGCCCCCTCTCTGTTCAGCTGCCCTGGGGTCCCCTTATCCTCCCTTGCTGGCTGTGTCCCAAGCTAGGTGGCATTCATGGTGGGGCGTGTAGTTGGGAGGTGAAATAAGGTGATTATGTAATTAGCCAAAGTCCATCCCTCTTTTTCAGGCAGTATAAAGGCAAACCACCCCACCCATCACCATCTGTCATCTCACTACCACCATGCTGGCCTCAGGGCTGCTTCTGGTGGCCTTGCTGGCCTGCCTGACTGTGATGGTCTTGATGTCTGTCTGGCAGCAGAGGAAGAGCAGGGGGAAGCTGCCTCCGGGACCCACCCCACTGCCCTTCATTGGAAACTACCTCCAGCTGAACACAGAGCACATATGTGACTCCATCATGAAG
Seq A exon
TTCAGTGAGTGCTATGGCCCCGTGTTCACCATTCACTTGGGGCCCCGGCGGGTCGTGGTGCTGTGTGGACATGATGCCGTCAGGGAGGCTCTGGTGGACCAGGCTGAGGAGTTCAGCGGGCGAGGCGAGCAAGCCACCTTCGACTGGGTCTTCAAAGGCTATG
Seq C2 exon
GCGTGGCGTTCAGCAACGGGGAGCGCGCCAAGCAGCTCCTGCGCTTTGCCATCGCCACCCTGAGGGACTTCGGGGTGGGCAAGCGAGGCATCGAGGAGCGCATCCAGGAGGAGTCGGGCTTCCTCATCGAGGCCATCCGGAGCACGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198077_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(13.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCTGTCTGGCAGCAGAG
R:
GATGAGGAAGCCCGACTCCTC
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains