GgaEX1004415 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P5U6]
Coordinates
chr6:16117861-16119855:+
Coord C1 exon
chr6:16117861-16118719
Coord A exon
chr6:16119050-16119212
Coord C2 exon
chr6:16119706-16119855
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCTCGCTTGCATTTTGACAGCTT
3' ss Score
6.61
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAACACCACTCCCACAGCATGAACTCTGTAACAATGAACTTAGAGGGAAATAAGCAGTACTATGAGCACACTTCAAATTTTTTAAACATGTAAGCCTCTACCATGTTTAACACAAGGTGTGTCTTTAATCACCATTTCATATCTGACAATACGTGGTTTGCAACATAGGGCAAAATCAAATGATAGACTTGCAGGACTGATTAACCCAACCATGTGATAAAAAAAACATGTAGTTTACCTAACAAAGCAGATCCGTTCCGTATATAAAGGGGCACGGGCAGCCATAACAGTGCACTCAGAAGCTCGTGCCCACGTGGGAGATGTTGCTCCTGGGAGCAGCGAGTGTGGTCCTCCTGGTTTGTGTTGCTTGCCTGCTCTCCATCGTGCAATGGAGAAAAAGGACTGGAAAGGGGAAGATGCCTGAGGGACCAACTCCCCTTCCCATCGTAGGGAACATACTGGAGGTGAAACCAAAGAATTTAGCCAAAACCCTTGAGAAG
Seq A exon
CTTGCTGAGAAATATGGGCCCGTCTTCTCAGTGCAACTGGGTTCAACTCCAGTAGTGGTGCTATCTGGATATGAGGCGGTGAAAGAAGCCTTGATTGATCGTGCGGATGAGTTTGCTGCCAGAGGACACATGCCTATCGGGGACCGGACTAACAAAGGATTAG
Seq C2 exon
GCATTATTTTCAGCAACAACGAGGGATGGTTACACGTTCGGCGGTTTGCTCTCAGCACTCTGCGCAACTTTGGGATGGGGAAGAGGAGCATTGAAGAGAGGATCCAGGAGGAAGCTGAGCACTTGCTTGAAGAGATCACAAAAACAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023925_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(8.9=43.3)
A:
PF0006717=p450=FE(18.6=100)
C2:
PF0006717=p450=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGTGCACTCAGAAGCTCG
R:
CGAACGTGTAACCATCCCTCG
Band lengths:
255-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]