RnoEX0025862 @ rn6
Exon Skipping
Gene
ENSRNOG00000021924 | Cyp2c22
Description
cytochrome P450, family 2, subfamily c, polypeptide 22 [Source:RGD Symbol;Acc:620368]
Coordinates
chr1:259282651-259287684:-
Coord C1 exon
chr1:259287494-259287684
Coord A exon
chr1:259284731-259284893
Coord C2 exon
chr1:259282651-259282800
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCACTCTGCTCTGTTTTCAGCTA
3' ss Score
10.13
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
GTGTGTTTGTTCCCAGTGAGCCAATGGCTCTCTTCATTTTTCTGGGGATTTGGCTTTCTTGTTTGGTTTTTCTTTTTCTATGGAATCAGCACCATGTCAGAAGGAAGCTCCCACCTGGTCCCACTCCTCTACCAATTTTTGGCAATATTTTGCAAGTGGGTGTTAAAAATATCAGCAAATCTATGTGCATG
Seq A exon
CTAGCAAAAGAGTACGGGCCTGTGTTCACCATGTATCTGGGCATGAAGCCCACTGTGGTGCTGTATGGATATGAAGTATTGAAAGAAGCTCTGATTGACCGGGGAGAAGAGTTTTCTGATAAAATGCATTCGTCAATGCTCAGTAAAGTCAGCCAAGGGTTAG
Seq C2 exon
GCATTGTCTTCAGCAATGGAGAAATATGGAAACAAACACGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAGAACTATTGAAAACCGAATTCAGGAGGAAGTTGTTTATCTGCTGGAAGCACTGAGAAAAACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021924_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(19.5=46.4)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGTTCCCAGTGAGCCA
R:
AAGACCATGAGGGAGAAACGC
Band lengths:
250-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]