HsaEX6089617 @ hg19
Exon Skipping
Gene
ENSG00000108242 | CYP2C18
Description
cytochrome P450, family 2, subfamily C, polypeptide 18 [Source:HGNC Symbol;Acc:2620]
Coordinates
chr10:96442710-96447935:+
Coord C1 exon
chr10:96442710-96442762
Coord A exon
chr10:96447527-96447689
Coord C2 exon
chr10:96447882-96447935
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTTTTCTATGTTTAGTTC
3' ss Score
8.32
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ATATTTAGGCAAGCTCCCTGTGCAAGTTCCCTTATCTGCACAAAACATCTAGT
Seq A exon
TTCTCAAAAGTCTATGGCCCTGTGTTCACTGTGTATTTTGGCCTGAAGCCCATTGTGGTGTTGCATGGATATGAAGCAGTGAAGGAGGCCCTGATTGATCATGGAGAGGAGTTTTCTGGAAGAGGAAGTTTTCCAGTGGCTGAAAAAGTTAACAAAGGACTTG
Seq C2 exon
GAATCCTTTTCAGCAATGGAAAGAGATGGAAGGAGATCCGGCGTTTCTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108242-'0-3,'0-2,2-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTAGGCAAGCTCCCTGTGC
R:
TGAGGCAGAAACGCCGGATC
Band lengths:
106-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)