GgaEX0024687 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108401539-108403119:+
Coord C1 exon
chr3:108401539-108401718
Coord A exon
chr3:108402643-108402805
Coord C2 exon
chr3:108402970-108403119
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTGTTCTACTAGCTG
3' ss Score
8.53
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATGGATTGGGCCAGCGTTGTTCCTGTGGGGTTACTGATGATCCTAATTCTCCTGCTGATTTTGAAAACACAAGATTTCTGGAGAAGCCAAGGGAAATTCCCCCCAGGACCGCAGCCTTTACCCATCATTGGAAATCTGCACATCATGGACCTAAAGAAGATTGGCCAGACAATGCTACAG
Seq A exon
CTGTCTGAAACGTATGGCCCAGTCTTCACAGTTCAGATGGGAATGAGGAAAGTTGTGGTGCTGTCAGGATATGACACAGTGAAGGAAGCTCTGGTGAATCATGCAGATGCATTTGTAGGGAGACCTAAAATACCAATCGTGGAAAAAGCAGGAAAAGGAAAAG
Seq C2 exon
GTGTTGTATTTTCTAGTGGAGAAAACTGGAAAGTGATGAGAAGATTTACTCTTACAACCTTACGAGACTTTGGGATGGGAAAGAAGGCCATAGAAGACTATGTTGTAGAGGAGTATGGATACCTGGCAGACGTAATTGAGTCACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTGTTCCTGTGGGGTTAC
R:
GGCCTTCTTTCCCATCCCAAA
Band lengths:
256-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]