MmuEX6009186 @ mm9
Exon Skipping
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:27542182-27544509:+
Coord C1 exon
chr7:27542182-27542379
Coord A exon
chr7:27544055-27544217
Coord C2 exon
chr7:27544360-27544509
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTGCCCTTATGGTTTGGCAGCTT
3' ss Score
5.91
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTCAGAAGTGATTAGACCAGGACCATGGAATTCAGTGTGCTGCTCCTTCTCGCTCTCACCACAGGCTTCTTGATATTCTTAGTCAGCCAAAGTCAGCCAAAGACCCATGGCCACTTCCCACCAGGACCTCGTCCCCTGCCCTTCTTGGGTAACCTCTTGCAGATGGACAGACGGGGCCTTCTGAGCTCTTTCATACAG
Seq A exon
CTTCAAGAAAAATATGGAGATGTGTTCACAGTACACCTGGGACCGAGGCCCGTGGTCATGTTGTGCGGGACAGACACCATAAGGGAAGCTCTGGTGAACCAAGCTGAGGCTTTCTCTGGCCGAGGGACAGTTGCTGTGCTTGATCCAATTGTTCAGGGATATG
Seq C2 exon
GTGTGATCTTTTCCAGTGGGGAACGTTGGAAAACCCTTCGGCGATTCTCTCTGGCCACCATGAGAGACTTTGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATAAAGGAAGAGGCCCAATGTTTGGTGGAGGAACTGAAGAAATACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.8)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATTCAGTGTGCTGCTCC
R:
CCAAAGTCTCTCATGGTGGCC
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: