DreEX6015232 @ danRer10
Exon Skipping
Gene
ENSDARG00000040433 | cyp2k22
Description
cytochrome P450, family 2, subfamily K, polypeptide 22 [Source:ZFIN;Acc:ZDB-GENE-040426-822]
Coordinates
chr3:8364159-8368573:-
Coord C1 exon
chr3:8368323-8368573
Coord A exon
chr3:8364389-8364551
Coord C2 exon
chr3:8364159-8364308
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCATCTTTTTTATCTTACAGCTG
3' ss Score
11.79
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGACCTAAATCAGGGATTGATCTGCGCACGTTTATGATAGATCTCTGAACATGGCGCTAGTTGGAGCATTATTACCTGGACTGAGCTTTACTGTAGGTATGGTAGTTGCTTTCCTGCTGCTGTTTTTAGTTATTTCTTACTTCTCCAGCTCTAAAGATCAGGGAAAATATCCTCCAGGACCCAAACCCCTGCCATTGCTGGGCAACCTGCACATTCTGGACCTGAAGAACACCTACATGAGCCTCTGGAAG
Seq A exon
CTGTCAAAACAATATGGGCCAGTTTACACAGTGCATATGGGCCCTAGGACAGTGGTAGTCCTGTCAGGATACAAGGCGGTCAAGGAGGCACTGGTGAACCTTTCAGAGGAGTTTGGAGAAAGAGATATCTCACCCATATTCCAGGATTTCAATGAGGGTTATG
Seq C2 exon
GGATAGTTTTTTCCAATGGTGAGAACTGGAAGGAAATGAGACGCTTTGCGCTGTCAAACCTACGAGACTTTGGAATGGGCAAAAAGAGAAGTGAAGAACTGATCACTGAAGAGATCAAATATCTAAAGGAGGAAATTGAGAGGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040433-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=38.8)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACATGGCGCTAGTTGGAG
R:
GCAAAGCGTCTCATTTCCTTCC
Band lengths:
255-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]