BtaEX6099848 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037559 | CYP2C18
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 18 (CYP2C18), mRNA. [Source:RefSeq mRNA;Acc:NM_001076051]
Coordinates
chr26:15931985-15940195:+
Coord C1 exon
chr26:15931985-15932194
Coord A exon
chr26:15939710-15939872
Coord C2 exon
chr26:15940046-15940195
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTCCATTTCCCAGCTC
3' ss Score
8.04
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTTCAGGCTCACAGTCTTCTGAGTAAGAAGAGAAGGCGCCAATGGATCTGGCTGTGGTCCTGGTGCTCTGTCTCTCCTGTCTGCTTCTCCTCTCACTCTGGAAACAGAGCTCTGGGAAAGGGAAGCTACCGCCGGGCCCCACTCCTCTCCCGATTCTTGGAAATATCCTACAGTTAGATGTTAAGAACATTGGCAAATCCTTAAGCAAT
Seq A exon
CTCTCAAACACCTATGGCCCTGTGTTCACAGTGTATTTTGGCTTGAGGCCCACTGTTGTGTTGCATGGGTATGAAGCAGTGAAAGAAGCCCTAATTGATCAGGGAGAAGAATTTTCTGGAAGAGGCAATATCCCAATGTCTCAAAGAGTTAATAAAGGATATG
Seq C2 exon
GAATCATTTTCAGCAACGGGAAGAGATGGAAGGAGATCCGACGCTTCTCCCTCATGACCCTGCGGAATTTTGGGATGGGGAAGAGGAGCATCGAGGACCGCGTTCAAGAAGAAGCGCACTGCCTGGTGGAGGAGTTGAGAAAAACCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037559-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGATCTGGCTGTGGTCC
R:
TTCCCCATCCCAAAATTCCGC
Band lengths:
252-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]