RnoEX0025871 @ rn6
Exon Skipping
Gene
ENSRNOG00000021405 | Cyp2c7
Description
cytochrome P450, family 2, subfamily c, polypeptide 7 [Source:RGD Symbol;Acc:620379]
Coordinates
chr1:148107439-148119857:-
Coord C1 exon
chr1:148119669-148119857
Coord A exon
chr1:148107754-148107916
Coord C2 exon
chr1:148107439-148107588
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTCCTATTTCCAGTTT
3' ss Score
9.17
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCATCAGTAAGGAGGGTCTCCATGGATCTGGTCACTTTCCTGGTACTTACTCTCTCCTCTCTCATTCTCCTCTCACTCTGGAGACAGAGCTCTAGGAGAAGGAAGCTCCCTCCTGGCCCCACTCCTCTCCCAATTATTGGTAATTTCCTCCAGATAGATGTGAAGAACATCAGCCAATCCTTAACCAAG
Seq A exon
TTTTCAAAAACCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACAGCCCACTGTCATATTGCATGGATATGAAGCAATAAAGGAAGCTCTGATTGATAACGGGGAGAAGTTTTCTGGTAGAGGAAGCTATCCAATGATTGAAAATGTTACTAAAGGTTTTG
Seq C2 exon
GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTCACAATCATGACCTTTCGGAATTTGGGAATTGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGCCTAGTGGAAGAACTGAGGAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021405-'1-7,'1-4,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(18.3=46.4)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACAGAGCTCTAGGAGAAGG
R:
TCTTCCACTAGGCACTGTGCT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]