MmuEX6032705 @ mm10
Exon Skipping
Gene
ENSMUSG00000003053 | Cyp2c29
Description
cytochrome P450, family 2, subfamily c, polypeptide 29 [Source:MGI Symbol;Acc:MGI:103238]
Coordinates
chr19:39287074-39291206:+
Coord C1 exon
chr19:39287074-39287285
Coord A exon
chr19:39290729-39290891
Coord C2 exon
chr19:39291057-39291206
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTTCTATTTCCAGTTC
3' ss Score
10.18
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTCTGTGATGCCTGATCACAACTGTGTCAGTAAGGAGGTTCGCTATGGATCTGGTCGTGTTCCTAGCGCTCACTCTATCCTGTCTTATTCTCCTCTCACTATGGAGACAGAGCTCTGGGAGAGGGAAGCTCCCTCCTGGCCCCACGCCTCTCCCAATTATTGGTAACTTCCTCCAGATAGATGTGAAGAACATCAGCCAATCCTTCACCAAC
Seq A exon
TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG
Seq C2 exon
GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003053-'5-12,'5-4,6-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(29.2=46.4)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGTCGTGTTCCTAGCG
R:
ATGTTCCTTTTCCCCATGCCC
Band lengths:
256-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types