MmuEX6032705 @ mm9
Exon Skipping
Gene
ENSMUSG00000003053 | Cyp2c29
Description
cytochrome P450, family 2, subfamily c, polypeptide 29 [Source:MGI Symbol;Acc:MGI:103238]
Coordinates
chr19:39361601-39365696:+
Coord C1 exon
chr19:39361601-39361775
Coord A exon
chr19:39365219-39365381
Coord C2 exon
chr19:39365547-39365696
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTTCTATTTCCAGTTC
3' ss Score
10.18
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTCGCTATGGATCTGGTCGTGTTCCTAGCGCTCACTCTATCCTGTCTTATTCTCCTCTCACTATGGAGACAGAGCTCTGGGAGAGGGAAGCTCCCTCCTGGCCCCACGCCTCTCCCAATTATTGGTAACTTCCTCCAGATAGATGTGAAGAACATCAGCCAATCCTTCACCAAC
Seq A exon
TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG
Seq C2 exon
GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003053-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(29.2=46.4)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGTCGTGTTCCTAGCG
R:
ATGTTCCTTTTCCCCATGCCC
Band lengths:
256-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: