MmuEX0013337 @ mm10
Exon Skipping
Gene
ENSMUSG00000060613 | Cyp2c70
Description
cytochrome P450, family 2, subfamily c, polypeptide 70 [Source:MGI Symbol;Acc:MGI:2385878]
Coordinates
chr19:40180361-40187286:-
Coord C1 exon
chr19:40187095-40187286
Coord A exon
chr19:40183866-40184028
Coord C2 exon
chr19:40180361-40180510
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCACTCTGCTCTGTTTTCAGCTA
3' ss Score
10.13
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AGTGCATTTGTTCCCAGTGAGTCAATGGCTCTCTTCATCTTTCTGGGGATTTGGCTTTCTTGTTTTCTTTTTCTTTTTCTATGGAATCAGCACCGTGGCAGAGGGAAGCTCCCACCTGGCCCCACTCCTTTACCAATTGTTGGAAATATTTTGCAAGTAGATGTTAAAAATATTAGCAAATCTATGGGCATG
Seq A exon
CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG
Seq C2 exon
GCATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060613_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.197
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(56.5=46.4)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=PD(39.1=85.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGTGAGTCAATGGCTCT
R:
AAGACCATGAGGGAGAAACGC
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types