RnoEX6001781 @ rn6
Exon Skipping
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83626639-83629304:+
Coord C1 exon
chr1:83626639-83626818
Coord A exon
chr1:83627415-83627577
Coord C2 exon
chr1:83629155-83629304
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATCTTCCTTCACTCCCAGCTC
3' ss Score
8.84
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATGGCACTGGGAGGGGCCTTCAGCATCTTTATGACGCTCTGCTTGTCTTGCCTGCTCATCCTGATAGCTTGGAAGCGAACCAGCAGGGGAGGAAAGCTGCCTCCCGGCCCCACACCAATACCATTTTTGGGGAACCTGTTACAAGTACGCATTGATGCCACATTTCAGTCCTTTCTGAAG
Seq A exon
CTCCAGAAAAAGTATGGCTCTGTGTTCACCGTATACTTTGGCCCAAGGCCAGTGGTTATCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGTCGTGGTGAAATGCCTACACTAGAGAAGAACTTTCAAGGTTATG
Seq C2 exon
GTTTAGCTCTGTCCAATGGAGAACGATGGAAGATTCTTCGGCGTTTTTCCCTGACTGTCCTTCGAAACTTTGGAATGGGGAAGCGAAGCATTGAGGAGCGGATCCAGGAGGAGGCCGGCTACCTACTGGAGGAACTCCATAAGGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827-'1-4,'1-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGTCTTGCCTGCTCATC
R:
GGATCCGCTCCTCAATGCTTC
Band lengths:
246-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]